IL_7UNV_030

3D structure

PDB id

7UNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UNV_030 not in the Motif Atlas

Geometric match to IL_5J7L_273

Geometric discrepancy: 0.2444

The information below is about IL_5J7L_273

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

7UNV|1|A|U|859
7UNV|1|A|U|860
7UNV|1|A|U|861
*
7UNV|1|A|A|894
7UNV|1|A|U|895
7UNV|1|A|G|896

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L16

Chain X

50S ribosomal protein L25