IL_7UNV_066

3D structure

PDB id

7UNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

7UNV|1|A|G|1689

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UNV_066 not in the Motif Atlas

Geometric match to IL_5J7L_308

Geometric discrepancy: 0.0679

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

7UNV|1|A|C|1676
7UNV|1|A|G|1677
7UNV|1|A|U|1678
7UNV|1|A|A|1679
7UNV|1|A|A|1680
7UNV|1|A|C|1681
*
7UNV|1|A|G|1686
7UNV|1|A|G|1687
7UNV|1|A|A|1688
7UNV|1|A|G|1689
7UNV|1|A|A|1690
7UNV|1|A|A|1691
7UNV|1|A|G|1692

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA