IL_7UNV_071

3D structure

PDB id

7UNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

7UNV|1|A|A|1886, 7UNV|1|A|A|1887

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UNV_071 not in the Motif Atlas

Geometric match to IL_4V9F_067

Geometric discrepancy: 0.0781

The information below is about IL_4V9F_067

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.4

Basepair signature

cWW-cWW

Number of instances in this motif group

30

Unit IDs

7UNV|1|A|U|1828
7UNV|1|A|G|1829
*
7UNV|1|A|U|1885
7UNV|1|A|A|1886
7UNV|1|A|A|1887
7UNV|1|A|A|1888

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2