IL_7UNV_083

3D structure

PDB id

7UNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCUG*CAUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UNV_083 not in the Motif Atlas

Geometric match to IL_3NDB_001

Geometric discrepancy: 0.3462

The information below is about IL_3NDB_001

Detailed Annotation

Self complementary

Broad Annotation

Self complementary

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

7UNV|1|A|C|2090
7UNV|1|A|C|2091
7UNV|1|A|U|2092
7UNV|1|A|G|2093
*
7UNV|1|A|C|2170
7UNV|1|A|A|2171
7UNV|1|A|U|2172
7UNV|1|A|G|2173

Current chains

Chain A

23S Ribosomal RNA

Nearby chains