IL_7UNV_106

3D structure

PDB id

7UNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUGAAG*CGUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UNV_106 not in the Motif Atlas

Geometric match to IL_5J7L_351

Geometric discrepancy: 0.1178

The information below is about IL_5J7L_351

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_29471.1

Basepair signature

cWW-cWW-L-tHS-L-cWW

Number of instances in this motif group

1

Unit IDs

7UNV|1|A|C|2793
7UNV|1|A|U|2794
7UNV|1|A|G|2795
7UNV|1|A|A|2796
7UNV|1|A|A|2797
7UNV|1|A|G|2798
*
7UNV|1|A|C|2876
7UNV|1|A|G|2877
7UNV|1|A|U|2878
7UNV|1|A|G|2879

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain U

50S ribosomal protein L22