IL_7UNV_139

3D structure

PDB id

7UNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

7UNV|1|a|A|566

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UNV_139 not in the Motif Atlas

Homologous match to IL_5J7L_026

Geometric discrepancy: 0.0816

The information below is about IL_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

7UNV|1|a|C|563
7UNV|1|a|G|564
7UNV|1|a|U|565
7UNV|1|a|A|566
7UNV|1|a|A|567
7UNV|1|a|A|568
7UNV|1|a|G|569
*
7UNV|1|a|C|874
7UNV|1|a|G|875

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain e

30S ribosomal protein S5

Chain l

30S ribosomal protein S12

Chain q

30S ribosomal protein S17