IL_7UNV_162

3D structure

PDB id

7UNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UG*CAA

Length

5 nucleotides

Bulged bases

7UNV|1|a|A|1190

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UNV_162 not in the Motif Atlas

Homologous match to IL_5J7L_049

Geometric discrepancy: 0.1226

The information below is about IL_5J7L_049

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

7UNV|1|a|U|1054
7UNV|1|a|G|1055
*
7UNV|1|a|C|1189
7UNV|1|a|A|1190
7UNV|1|a|A|1191

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain c

30S ribosomal protein S3

Chain e

30S ribosomal protein S5

Chain j

30S ribosomal protein S10

Chain n

30S ribosomal protein S14