IL_7UNV_166

3D structure

PDB id

7UNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUGC*GAGGAAG

Length

11 nucleotides

Bulged bases

7UNV|1|a|U|1153

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UNV_166 not in the Motif Atlas

Homologous match to IL_4LFB_050

Geometric discrepancy: 0.184

The information below is about IL_4LFB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42032.1

Basepair signature

cWW-cSH-cWW-tWH-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

7UNV|1|a|C|1152
7UNV|1|a|U|1153
7UNV|1|a|G|1154
7UNV|1|a|C|1155
*
7UNV|1|a|G|1169
7UNV|1|a|A|1170
7UNV|1|a|G|1171
7UNV|1|a|G|1172
7UNV|1|a|A|1173
7UNV|1|a|A|1174
7UNV|1|a|G|1175

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain b

30S ribosomal protein S2

Chain i

30S ribosomal protein S9