IL_7UNW_042

3D structure

PDB id

7UNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUUG*CACC

Length

8 nucleotides

Bulged bases

7UNW|1|A|U|1051

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UNW_042 not in the Motif Atlas

Homologous match to IL_5J7L_285

Geometric discrepancy: 0.4362

The information below is about IL_5J7L_285

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92446.2

Basepair signature

cWW-cWW-R-L-L

Number of instances in this motif group

5

Unit IDs

7UNW|1|A|G|1049
7UNW|1|A|U|1050
7UNW|1|A|U|1051
7UNW|1|A|G|1052
*
7UNW|1|A|C|1066
7UNW|1|A|A|1067
7UNW|1|A|C|1068
7UNW|1|A|C|1069

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L11

Chain O

50S ribosomal protein L16

Chain X

50S ribosomal protein L25