3D structure

PDB id
7UNW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-B)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.6 Å

Loop

Sequence
CUGUGAAG*UGGAG
Length
13 nucleotides
Bulged bases
7UNW|1|A|U|1198
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7UNW_046 not in the Motif Atlas
Geometric match to IL_5J7L_288
Geometric discrepancy: 0.0687
The information below is about IL_5J7L_288
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_70923.9
Basepair signature
cWW-tSS-tSH-L-tHS-tHS-cWW
Number of instances in this motif group
27

Unit IDs

7UNW|1|A|C|1195
7UNW|1|A|U|1196
7UNW|1|A|G|1197
7UNW|1|A|U|1198
7UNW|1|A|G|1199
7UNW|1|A|A|1200
7UNW|1|A|A|1201
7UNW|1|A|G|1202
*
7UNW|1|A|U|1221
7UNW|1|A|G|1222
7UNW|1|A|G|1223
7UNW|1|A|A|1224
7UNW|1|A|G|1225

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

Chain S
50S ribosomal protein L20

Coloring options:


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