IL_7UNW_084

3D structure

PDB id

7UNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GCCUG*CAUGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UNW_084 not in the Motif Atlas

Geometric match to IL_5BTM_001

Geometric discrepancy: 0.3877

The information below is about IL_5BTM_001

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

7UNW|1|A|G|2089
7UNW|1|A|C|2090
7UNW|1|A|C|2091
7UNW|1|A|U|2092
7UNW|1|A|G|2093
*
7UNW|1|A|C|2170
7UNW|1|A|A|2171
7UNW|1|A|U|2172
7UNW|1|A|G|2173
7UNW|1|A|C|2174

Current chains

Chain A

23S Ribosomal RNA

Nearby chains