3D structure

PDB id
7UNW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-B)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.6 Å

Loop

Sequence
GCCUG*CAUGC
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7UNW_084 not in the Motif Atlas
Geometric match to IL_5BTM_001
Geometric discrepancy: 0.3877
The information below is about IL_5BTM_001
Detailed Annotation
Triple non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_49751.4
Basepair signature
cWW-cWW-cWW-cWW-cWW
Number of instances in this motif group
16

Unit IDs

7UNW|1|A|G|2089
7UNW|1|A|C|2090
7UNW|1|A|C|2091
7UNW|1|A|U|2092
7UNW|1|A|G|2093
*
7UNW|1|A|C|2170
7UNW|1|A|A|2171
7UNW|1|A|U|2172
7UNW|1|A|G|2173
7UNW|1|A|C|2174

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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