IL_7UNW_088

3D structure

PDB id

7UNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CAG*CGCAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UNW_088 not in the Motif Atlas

Geometric match to IL_5J7L_332

Geometric discrepancy: 0.1713

The information below is about IL_5J7L_332

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61476.2

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

7

Unit IDs

7UNW|1|A|C|2284
7UNW|1|A|A|2285
7UNW|1|A|G|2286
*
7UNW|1|A|C|2304
7UNW|1|A|G|2305
7UNW|1|A|C|2306
7UNW|1|A|A|2307
7UNW|1|A|G|2308

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain F

50S ribosomal protein L5