IL_7UNW_101

3D structure

PDB id

7UNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UNW_101 not in the Motif Atlas

Geometric match to IL_5J7L_346

Geometric discrepancy: 0.0726

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7UNW|1|A|C|2639
7UNW|1|A|U|2640
7UNW|1|A|A|2641
7UNW|1|A|G|2642
7UNW|1|A|U|2643
7UNW|1|A|A|2644
7UNW|1|A|C|2645
*
7UNW|1|A|G|2650
7UNW|1|A|G|2651
7UNW|1|A|A|2652
7UNW|1|A|C|2653
7UNW|1|A|C|2654
7UNW|1|A|G|2655

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L6

Chain x

Translation initiation factor IF-2