IL_7UNW_102

3D structure

PDB id

7UNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CCUCU*AUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UNW_102 not in the Motif Atlas

Geometric match to IL_7RQB_104

Geometric discrepancy: 0.088

The information below is about IL_7RQB_104

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.6

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

14

Unit IDs

7UNW|1|A|C|2667
7UNW|1|A|C|2668
7UNW|1|A|U|2669
7UNW|1|A|C|2670
7UNW|1|A|U|2671
*
7UNW|1|A|A|2712
7UNW|1|A|U|2713
7UNW|1|A|G|2714

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain M

50S ribosomal protein L14

Chain R

50S ribosomal protein L19