3D structure

PDB id
7UNW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-B)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.6 Å

Loop

Sequence
GAUAAC*GGAAAC
Length
12 nucleotides
Bulged bases
7UNW|1|A|A|2752
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7UNW_105 not in the Motif Atlas
Geometric match to IL_5J7L_350
Geometric discrepancy: 0.0937
The information below is about IL_5J7L_350
Detailed Annotation
UAA/GAN with extra cWW
Broad Annotation
No text annotation
Motif group
IL_49767.8
Basepair signature
cWW-cWW-tWH-L-tHS-cWW
Number of instances in this motif group
6

Unit IDs

7UNW|1|A|G|2724
7UNW|1|A|A|2725
7UNW|1|A|U|2726
7UNW|1|A|A|2727
7UNW|1|A|A|2728
7UNW|1|A|C|2729
*
7UNW|1|A|G|2749
7UNW|1|A|G|2750
7UNW|1|A|A|2751
7UNW|1|A|A|2752
7UNW|1|A|A|2753
7UNW|1|A|C|2754

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

Chain 8
50S ribosomal protein L36
Chain G
50S ribosomal protein L6
Chain L
50S ribosomal protein L13

Coloring options:


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