IL_7UNW_182

3D structure

PDB id

7UNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UNW_182 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0992

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7UNW|1|A|U|1838
7UNW|1|A|U|1839
7UNW|1|A|A|1840
7UNW|1|A|A|1841
7UNW|1|A|U|1842
7UNW|1|A|U|1843
7UNW|1|A|G|1844
7UNW|1|A|A|1845
7UNW|1|A|U|1846
7UNW|1|A|G|1847
*
7UNW|1|A|U|1869
7UNW|1|A|U|1870
7UNW|1|A|G|1871
7UNW|1|A|A|1872
7UNW|1|A|U|1873
7UNW|1|A|C|1874
7UNW|1|A|G|1875
7UNW|1|A|A|1876
7UNW|1|A|A|1877
7UNW|1|A|G|1878

Current chains

Chain A

23S Ribosomal RNA

Nearby chains