IL_7UOO_125

3D structure

PDB id

7UOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.34 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UOO_125 not in the Motif Atlas

Geometric match to IL_4V9F_100

Geometric discrepancy: 0.2237

The information below is about IL_4V9F_100

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

7UOO|1|1|A|3342
7UOO|1|1|G|3343
7UOO|1|1|A|3344
7UOO|1|1|G|3345
*
7UOO|1|1|C|3360
7UOO|1|1|G|3361
7UOO|1|1|A|3362
7UOO|1|1|U|3363

Current chains

Chain 1

25S rRNA

Nearby chains

Chain R

60S ribosomal protein L19-A