IL_7UPH_016

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

UUG*CA

Length

5 nucleotides

Bulged bases

7UPH|1|I|U|367

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UPH_016 not in the Motif Atlas

Homologous match to IL_5J7L_017

Geometric discrepancy: 0.3074

The information below is about IL_5J7L_017

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

7UPH|1|I|U|366
7UPH|1|I|U|367
7UPH|1|I|G|368
*
7UPH|1|I|C|391
7UPH|1|I|A|392

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain C

30S ribosomal protein S16