IL_7UPH_018

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

UGG*CUGA

Length

7 nucleotides

Bulged bases

7UPH|1|I|G|387

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UPH_018 not in the Motif Atlas

Homologous match to IL_6CZR_128

Geometric discrepancy: 0.3517

The information below is about IL_6CZR_128

Detailed Annotation

Single bulged G, near cWW

Broad Annotation

Single bulged G, near cWW

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

7UPH|1|I|U|374
7UPH|1|I|G|375
7UPH|1|I|G|376
*
7UPH|1|I|C|385
7UPH|1|I|U|386
7UPH|1|I|G|387
7UPH|1|I|A|388

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain C

30S ribosomal protein S16