IL_7UPH_019

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UPH_019 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.254

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

7UPH|1|I|U|408
7UPH|1|I|G|409
7UPH|1|I|A|410
7UPH|1|I|A|411
7UPH|1|I|G|412
7UPH|1|I|A|413
7UPH|1|I|A|414
7UPH|1|I|G|415
*
7UPH|1|I|U|426
7UPH|1|I|G|427
7UPH|1|I|U|428
7UPH|1|I|A|429
7UPH|1|I|A|430
7UPH|1|I|A|431
7UPH|1|I|G|432

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain Y

30S ribosomal protein S4