IL_7UPH_021

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

7UPH|1|I|U|484

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UPH_021 not in the Motif Atlas

Geometric match to IL_5J7L_022

Geometric discrepancy: 0.2166

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7UPH|1|I|G|445
7UPH|1|I|G|446
7UPH|1|I|A|447
7UPH|1|I|G|448
7UPH|1|I|G|449
*
7UPH|1|I|C|482
7UPH|1|I|G|483
7UPH|1|I|U|484
7UPH|1|I|U|485
7UPH|1|I|A|486
7UPH|1|I|C|487

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain C

30S ribosomal protein S16

Chain Y

30S ribosomal protein S4