IL_7UPH_023

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

CGGCUAAC*GG

Length

10 nucleotides

Bulged bases

7UPH|1|I|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UPH_023 not in the Motif Atlas

Homologous match to IL_5J7L_024

Geometric discrepancy: 0.2072

The information below is about IL_5J7L_024

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

7UPH|1|I|C|503
7UPH|1|I|G|504
7UPH|1|I|G|505
7UPH|1|I|C|506
7UPH|1|I|U|507
7UPH|1|I|A|508
7UPH|1|I|A|509
7UPH|1|I|C|510
*
7UPH|1|I|G|539
7UPH|1|I|G|540

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain Y

30S ribosomal protein S4

Chain g

30S ribosomal protein S12