IL_7UPH_024

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

G(PSU)GCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

7UPH|1|I|A|531, 7UPH|1|I|U|533, 7UPH|1|I|A|534

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UPH_024 not in the Motif Atlas

Homologous match to IL_5J7L_025

Geometric discrepancy: 0.2124

The information below is about IL_5J7L_025

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.4

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7UPH|1|I|G|514
7UPH|1|I|PSU|515
7UPH|1|I|G|516
7UPH|1|I|C|517
7UPH|1|I|C|518
7UPH|1|I|A|519
7UPH|1|I|G|520
*
7UPH|1|I|C|527
7UPH|1|I|G|528
7UPH|1|I|G|529
7UPH|1|I|U|530
7UPH|1|I|A|531
7UPH|1|I|A|532
7UPH|1|I|U|533
7UPH|1|I|A|534
7UPH|1|I|C|535

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain X

30S ribosomal protein S3

Chain Y

30S ribosomal protein S4

Chain g

30S ribosomal protein S12