IL_7UPH_035

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

GGGAGC*GUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UPH_035 not in the Motif Atlas

Geometric match to IL_4V88_435

Geometric discrepancy: 0.3711

The information below is about IL_4V88_435

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_22046.1

Basepair signature

cWW-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

7UPH|1|I|G|773
7UPH|1|I|G|774
7UPH|1|I|G|775
7UPH|1|I|A|776
7UPH|1|I|G|777
7UPH|1|I|C|778
*
7UPH|1|I|G|802
7UPH|1|I|U|803
7UPH|1|I|C|804

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain H

30S ribosomal protein S21

Chain K

50S ribosomal protein L2

Chain f

30S ribosomal protein S11