IL_7UPH_045

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

GCUGCAU*AUG(2MG)C

Length

12 nucleotides

Bulged bases

7UPH|1|I|C|1053

QA status

Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UPH_045 not in the Motif Atlas

Homologous match to IL_5J7L_047

Geometric discrepancy: 0.3478

The information below is about IL_5J7L_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7UPH|1|I|G|1049
7UPH|1|I|C|1050
7UPH|1|I|U|1051
7UPH|1|I|G|1052
7UPH|1|I|C|1053
7UPH|1|I|A|1054
7UPH|1|I|U|1055
*
7UPH|1|I|A|1203
7UPH|1|I|U|1204
7UPH|1|I|G|1205
7UPH|1|I|2MG|1206
7UPH|1|I|C|1207

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain A

30S ribosomal protein S14

Chain X

30S ribosomal protein S3

Chain e

30S ribosomal protein S10