IL_7UPH_053

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

CGACC*GCAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UPH_053 not in the Motif Atlas

Homologous match to IL_5J7L_056

Geometric discrepancy: 0.2751

The information below is about IL_5J7L_056

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

7UPH|1|I|C|1258
7UPH|1|I|G|1259
7UPH|1|I|A|1260
7UPH|1|I|C|1261
7UPH|1|I|C|1262
*
7UPH|1|I|G|1271
7UPH|1|I|C|1272
7UPH|1|I|A|1273
7UPH|1|I|A|1274
7UPH|1|I|G|1275

Current chains

Chain I

Tethered rRNA

Nearby chains