IL_7UPH_054

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UPH_054 not in the Motif Atlas

Geometric match to IL_5J7L_057

Geometric discrepancy: 0.2834

The information below is about IL_5J7L_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

7UPH|1|I|C|1302
7UPH|1|I|G|1303
7UPH|1|I|G|1304
7UPH|1|I|A|1305
7UPH|1|I|U|1306
7UPH|1|I|U|1307
*
7UPH|1|I|A|1328
7UPH|1|I|U|1329
7UPH|1|I|G|1330
7UPH|1|I|A|1331
7UPH|1|I|A|1332
7UPH|1|I|G|1333

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain h

30S ribosomal protein S13