IL_7UPH_071

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

GUAAG*CGUUAUAAC

Length

14 nucleotides

Bulged bases

7UPH|1|I|U|1602

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UPH_071 not in the Motif Atlas

Homologous match to IL_5J7L_248

Geometric discrepancy: 0.5754

The information below is about IL_5J7L_248

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37015.1

Basepair signature

cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L

Number of instances in this motif group

1

Unit IDs

7UPH|1|I|G|1581
7UPH|1|I|U|1582
7UPH|1|I|A|1583
7UPH|1|I|A|1584
7UPH|1|I|G|1585
*
7UPH|1|I|C|1597
7UPH|1|I|G|1598
7UPH|1|I|U|1599
7UPH|1|I|U|1600
7UPH|1|I|A|1601
7UPH|1|I|U|1602
7UPH|1|I|A|1603
7UPH|1|I|A|1604
7UPH|1|I|C|1605

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain t

50S ribosomal protein L24

Chain x

50S ribosomal protein L29