IL_7UPH_075

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UPH_075 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.4084

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

7UPH|1|I|C|1774
7UPH|1|I|C|1775
7UPH|1|I|U|1776
7UPH|1|I|G|1777
7UPH|1|I|A|1778
7UPH|1|I|A|1779
7UPH|1|I|U|1780
7UPH|1|I|C|1781
*
7UPH|1|I|G|1859
7UPH|1|I|U|1860
7UPH|1|I|G|1861
7UPH|1|I|A|1862
7UPH|1|I|G|1863

Current chains

Chain I

Tethered rRNA

Nearby chains