IL_7UPH_077

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

7UPH|1|I|A|2004, 7UPH|1|I|A|2008

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UPH_077 not in the Motif Atlas

Geometric match to IL_5J7L_255

Geometric discrepancy: 0.1826

The information below is about IL_5J7L_255

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

7UPH|1|I|G|1981
7UPH|1|I|A|1982
7UPH|1|I|A|1983
7UPH|1|I|C|1984
*
7UPH|1|I|G|1996
7UPH|1|I|A|1997
7UPH|1|I|G|1998
7UPH|1|I|U|1999
7UPH|1|I|G|2000
7UPH|1|I|A|2001
7UPH|1|I|A|2002
7UPH|1|I|A|2003
7UPH|1|I|A|2004
7UPH|1|I|A|2005
7UPH|1|I|G|2006
7UPH|1|I|A|2007
7UPH|1|I|A|2008
7UPH|1|I|C|2009

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain r

50S ribosomal protein L22

Chain t

50S ribosomal protein L24