IL_7UPH_078

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

GGAGC*GUGAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UPH_078 not in the Motif Atlas

Geometric match to IL_4V9F_085

Geometric discrepancy: 0.3384

The information below is about IL_4V9F_085

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

7UPH|1|I|G|2036
7UPH|1|I|G|2037
7UPH|1|I|A|2038
7UPH|1|I|G|2039
7UPH|1|I|C|2040
*
7UPH|1|I|G|2053
7UPH|1|I|U|2054
7UPH|1|I|G|2055
7UPH|1|I|A|2056
7UPH|1|I|C|2057

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain R

50S ribosomal protein L13

Chain p

50S ribosomal protein L20