3D structure

PDB id
7UPH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a ribosome with tethered subunits
Experimental method
ELECTRON MICROSCOPY
Resolution
4.18 Å

Loop

Sequence
CCG*CUG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7UPH_081 not in the Motif Atlas
Geometric match to IL_5TBW_027
Geometric discrepancy: 0.1956
The information below is about IL_5TBW_027
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_44258.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
301

Unit IDs

7UPH|1|I|C|2172
7UPH|1|I|C|2173
7UPH|1|I|G|2174
*
7UPH|1|I|C|2306
7UPH|1|I|U|2307
7UPH|1|I|G|2308

Current chains

Chain I
Tethered rRNA

Nearby chains

Chain M
50S ribosomal protein L4
Chain T
50S ribosomal protein L15

Coloring options:


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