IL_7UPH_090

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

CAU*AAUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UPH_090 not in the Motif Atlas

Geometric match to IL_4V84_070

Geometric discrepancy: 0.3714

The information below is about IL_4V84_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_23164.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

7UPH|1|I|C|2348
7UPH|1|I|A|2349
7UPH|1|I|U|2350
*
7UPH|1|I|A|2421
7UPH|1|I|A|2422
7UPH|1|I|U|2423
7UPH|1|I|G|2424

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain y

50S ribosomal protein L30