3D structure

PDB id
7UPH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a ribosome with tethered subunits
Experimental method
ELECTRON MICROSCOPY
Resolution
4.18 Å

Loop

Sequence
GA*UGC
Length
5 nucleotides
Bulged bases
7UPH|1|I|G|2408
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7UPH_092 not in the Motif Atlas
Homologous match to IL_5J7L_271
Geometric discrepancy: 0.4052
The information below is about IL_5J7L_271
Detailed Annotation
Single bulged G
Broad Annotation
No text annotation
Motif group
IL_00225.14
Basepair signature
cWW-L-cWW
Number of instances in this motif group
50

Unit IDs

7UPH|1|I|G|2362
7UPH|1|I|A|2363
*
7UPH|1|I|U|2407
7UPH|1|I|G|2408
7UPH|1|I|C|2409

Current chains

Chain I
Tethered rRNA

Nearby chains

Chain J
5S ribosomal RNA; 5S rRNA
Chain U
50S ribosomal protein L16

Coloring options:


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