IL_7UPH_099

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UPH_099 not in the Motif Atlas

Geometric match to IL_7RQB_037

Geometric discrepancy: 0.3184

The information below is about IL_7RQB_037

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_15861.7

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

7UPH|1|I|U|2498
7UPH|1|I|C|2499
7UPH|1|I|C|2500
7UPH|1|I|C|2501
7UPH|1|I|A|2502
7UPH|1|I|A|2503
7UPH|1|I|A|2504
7UPH|1|I|G|2505
*
7UPH|1|I|C|2644
7UPH|1|I|A|2645

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain R

50S ribosomal protein L13

Chain p

50S ribosomal protein L20