IL_7UPH_101

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

7UPH|1|I|A|2637

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UPH_101 not in the Motif Atlas

Geometric match to IL_4WF9_039

Geometric discrepancy: 0.3789

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

7UPH|1|I|U|2512
7UPH|1|I|U|2513
7UPH|1|I|A|2514
7UPH|1|I|A|2515
7UPH|1|I|G|2516
7UPH|1|I|U|2517
7UPH|1|I|G|2518
*
7UPH|1|I|C|2634
7UPH|1|I|U|2635
7UPH|1|I|A|2636
7UPH|1|I|A|2637
7UPH|1|I|A|2638

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain O

50S ribosomal protein L6

Chain R

50S ribosomal protein L13

Chain m

50S ribosomal protein L36