IL_7UPH_102
3D structure
- PDB id
- 7UPH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a ribosome with tethered subunits
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.18 Å
Loop
- Sequence
- GGGAAAC*GGAAGAUGUAACGGGGC
- Length
- 24 nucleotides
- Bulged bases
- 7UPH|1|I|A|2621, 7UPH|1|I|U|2624
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7UPH_102 not in the Motif Atlas
- Geometric match to IL_5J7L_281
- Geometric discrepancy: 0.2432
- The information below is about IL_5J7L_281
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.3
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
7UPH|1|I|G|2518
7UPH|1|I|G|2519
7UPH|1|I|G|2520
7UPH|1|I|A|2521
7UPH|1|I|A|2522
7UPH|1|I|A|2523
7UPH|1|I|C|2524
*
7UPH|1|I|G|2618
7UPH|1|I|G|2619
7UPH|1|I|A|2620
7UPH|1|I|A|2621
7UPH|1|I|G|2622
7UPH|1|I|A|2623
7UPH|1|I|U|2624
7UPH|1|I|G|2625
7UPH|1|I|U|2626
7UPH|1|I|A|2627
7UPH|1|I|A|2628
7UPH|1|I|C|2629
7UPH|1|I|G|2630
7UPH|1|I|G|2631
7UPH|1|I|G|2632
7UPH|1|I|G|2633
7UPH|1|I|C|2634
Current chains
- Chain I
- Tethered rRNA
Nearby chains
- Chain L
- 50S ribosomal protein L3
- Chain R
- 50S ribosomal protein L13
- Chain U
- 50S ribosomal protein L16
- Chain m
- 50S ribosomal protein L36
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