IL_7UPH_107

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

GAAAG*CUC

Length

8 nucleotides

Bulged bases

7UPH|1|I|A|2582

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UPH_107 not in the Motif Atlas

Geometric match to IL_4V88_397

Geometric discrepancy: 0.3303

The information below is about IL_4V88_397

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

7UPH|1|I|G|2581
7UPH|1|I|A|2582
7UPH|1|I|A|2583
7UPH|1|I|A|2584
7UPH|1|I|G|2585
*
7UPH|1|I|C|2594
7UPH|1|I|U|2595
7UPH|1|I|C|2596

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain O

50S ribosomal protein L6

Chain m

50S ribosomal protein L36