IL_7UPH_111
3D structure
- PDB id
- 7UPH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a ribosome with tethered subunits
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.18 Å
Loop
- Sequence
- AUAAGUAA*UGAAAUU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7UPH_111 not in the Motif Atlas
- Geometric match to IL_5J7L_289
- Geometric discrepancy: 0.2259
- The information below is about IL_5J7L_289
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
7UPH|1|I|A|2756
7UPH|1|I|U|2757
7UPH|1|I|A|2758
7UPH|1|I|A|2759
7UPH|1|I|G|2760
7UPH|1|I|U|2761
7UPH|1|I|A|2762
7UPH|1|I|A|2763
*
7UPH|1|I|U|3505
7UPH|1|I|G|3506
7UPH|1|I|A|3507
7UPH|1|I|A|3508
7UPH|1|I|A|3509
7UPH|1|I|U|3510
7UPH|1|I|U|3511
Current chains
- Chain I
- Tethered rRNA
Nearby chains
- Chain M
- 50S ribosomal protein L4
- Chain i
- 50S ribosomal protein L32
- Chain r
- 50S ribosomal protein L22
Coloring options: