IL_7UPH_113
3D structure
- PDB id
- 7UPH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a ribosome with tethered subunits
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.18 Å
Loop
- Sequence
- CCAAC*GGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7UPH_113 not in the Motif Atlas
- Geometric match to IL_4WF9_050
- Geometric discrepancy: 0.1962
- The information below is about IL_4WF9_050
- Detailed Annotation
- Major groove minor groove platform with tHH
- Broad Annotation
- No text annotation
- Motif group
- IL_83150.2
- Basepair signature
- cWW-tHH-cWW-L-L
- Number of instances in this motif group
- 4
Unit IDs
7UPH|1|I|C|2813
7UPH|1|I|C|2814
7UPH|1|I|A|2815
7UPH|1|I|A|2816
7UPH|1|I|C|2817
*
7UPH|1|I|G|2825
7UPH|1|I|G|2826
7UPH|1|I|G|2827
Current chains
- Chain I
- Tethered rRNA
Nearby chains
- Chain r
- 50S ribosomal protein L22
- Chain s
- 50S ribosomal protein L23
Coloring options: