IL_7UPH_129

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

7UPH|1|I|G|3193

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UPH_129 not in the Motif Atlas

Geometric match to IL_5J7L_308

Geometric discrepancy: 0.3313

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

7UPH|1|I|C|3180
7UPH|1|I|G|3181
7UPH|1|I|U|3182
7UPH|1|I|A|3183
7UPH|1|I|A|3184
7UPH|1|I|C|3185
*
7UPH|1|I|G|3190
7UPH|1|I|G|3191
7UPH|1|I|A|3192
7UPH|1|I|G|3193
7UPH|1|I|A|3194
7UPH|1|I|A|3195
7UPH|1|I|G|3196

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain K

50S ribosomal protein L2