IL_7UPH_130

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

7UPH|1|I|U|3208

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UPH_130 not in the Motif Atlas

Geometric match to IL_5J7L_309

Geometric discrepancy: 0.3531

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7UPH|1|I|U|3206
7UPH|1|I|A|3207
7UPH|1|I|U|3208
7UPH|1|I|G|3209
7UPH|1|I|U|3210
7UPH|1|I|A|3211
7UPH|1|I|G|3212
*
7UPH|1|I|U|3236
7UPH|1|I|G|3237
7UPH|1|I|A|3238
7UPH|1|I|A|3239
7UPH|1|I|A|3240

Current chains

Chain I

Tethered rRNA

Nearby chains