IL_7UPH_130
3D structure
- PDB id
- 7UPH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a ribosome with tethered subunits
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.18 Å
Loop
- Sequence
- UAUGUAG*UGAAA
- Length
- 12 nucleotides
- Bulged bases
- 7UPH|1|I|U|3208
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7UPH_130 not in the Motif Atlas
- Geometric match to IL_5J7L_309
- Geometric discrepancy: 0.3531
- The information below is about IL_5J7L_309
- Detailed Annotation
- 6x5 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_88269.4
- Basepair signature
- cWW-tWW-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
7UPH|1|I|U|3206
7UPH|1|I|A|3207
7UPH|1|I|U|3208
7UPH|1|I|G|3209
7UPH|1|I|U|3210
7UPH|1|I|A|3211
7UPH|1|I|G|3212
*
7UPH|1|I|U|3236
7UPH|1|I|G|3237
7UPH|1|I|A|3238
7UPH|1|I|A|3239
7UPH|1|I|A|3240
Current chains
- Chain I
- Tethered rRNA
Nearby chains
No other chains within 10ÅColoring options: