3D structure

PDB id
7UPH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a ribosome with tethered subunits
Experimental method
ELECTRON MICROSCOPY
Resolution
4.18 Å

Loop

Sequence
UAUGUAG*UGAAA
Length
12 nucleotides
Bulged bases
7UPH|1|I|U|3208
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7UPH_130 not in the Motif Atlas
Geometric match to IL_5J7L_309
Geometric discrepancy: 0.3531
The information below is about IL_5J7L_309
Detailed Annotation
6x5 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_88269.4
Basepair signature
cWW-tWW-cSH-tWH-tHS-cWW
Number of instances in this motif group
3

Unit IDs

7UPH|1|I|U|3206
7UPH|1|I|A|3207
7UPH|1|I|U|3208
7UPH|1|I|G|3209
7UPH|1|I|U|3210
7UPH|1|I|A|3211
7UPH|1|I|G|3212
*
7UPH|1|I|U|3236
7UPH|1|I|G|3237
7UPH|1|I|A|3238
7UPH|1|I|A|3239
7UPH|1|I|A|3240

Current chains

Chain I
Tethered rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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