IL_7UPH_135

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

UGC*GUAAA

Length

8 nucleotides

Bulged bases

7UPH|1|I|A|3393, 7UPH|1|I|A|3394

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UPH_135 not in the Motif Atlas

Geometric match to IL_7RQB_097

Geometric discrepancy: 0.3661

The information below is about IL_7RQB_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_90933.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

7UPH|1|I|U|3335
7UPH|1|I|G|3336
7UPH|1|I|C|3337
*
7UPH|1|I|G|3391
7UPH|1|I|U|3392
7UPH|1|I|A|3393
7UPH|1|I|A|3394
7UPH|1|I|A|3395

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain K

50S ribosomal protein L2