3D structure

PDB id
7UPH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a ribosome with tethered subunits
Experimental method
ELECTRON MICROSCOPY
Resolution
4.18 Å

Loop

Sequence
GC*GCAC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7UPH_138 not in the Motif Atlas
Geometric match to IL_7RQB_076
Geometric discrepancy: 0.2669
The information below is about IL_7RQB_076
Detailed Annotation
Bulged stacked bases
Broad Annotation
Bulged stacked bases
Motif group
IL_59677.2
Basepair signature
cWW-cWW
Number of instances in this motif group
19

Unit IDs

7UPH|1|I|G|3427
7UPH|1|I|C|3428
*
7UPH|1|I|G|3458
7UPH|1|I|C|3459
7UPH|1|I|A|3460
7UPH|1|I|C|3461

Current chains

Chain I
Tethered rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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