IL_7UPH_139

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

CGAAA(5MU)UCCUUG*C(5MC)UG

Length

16 nucleotides

Bulged bases

7UPH|1|I|A|3432, 7UPH|1|I|U|3438

QA status

Modified nucleotides: 5MU, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UPH_139 not in the Motif Atlas

Geometric match to IL_7A0S_072

Geometric discrepancy: 0.3847

The information below is about IL_7A0S_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

7UPH|1|I|C|3428
7UPH|1|I|G|3429
7UPH|1|I|A|3430
7UPH|1|I|A|3431
7UPH|1|I|A|3432
7UPH|1|I|5MU|3433
7UPH|1|I|U|3434
7UPH|1|I|C|3435
7UPH|1|I|C|3436
7UPH|1|I|U|3437
7UPH|1|I|U|3438
7UPH|1|I|G|3439
*
7UPH|1|I|C|3455
7UPH|1|I|5MC|3456
7UPH|1|I|U|3457
7UPH|1|I|G|3458

Current chains

Chain I

Tethered rRNA

Nearby chains