IL_7UPH_141

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

ACG*CUAU

Length

7 nucleotides

Bulged bases

7UPH|1|I|C|3549, 7UPH|1|I|U|4107

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UPH_141 not in the Motif Atlas

Homologous match to IL_5J7L_321

Geometric discrepancy: 0.2655

The information below is about IL_5J7L_321

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83389.2

Basepair signature

cWW-cWW

Number of instances in this motif group

5

Unit IDs

7UPH|1|I|A|3548
7UPH|1|I|C|3549
7UPH|1|I|G|3550
*
7UPH|1|I|C|4106
7UPH|1|I|U|4107
7UPH|1|I|A|4108
7UPH|1|I|U|4109

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain L

50S ribosomal protein L3

Chain i

50S ribosomal protein L32

Chain r

50S ribosomal protein L22