IL_7UPH_143

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

GU(G7M)A*UCC

Length

7 nucleotides

Bulged bases

7UPH|1|I|U|3562

QA status

Modified nucleotides: G7M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UPH_143 not in the Motif Atlas

Geometric match to IL_5C5W_002

Geometric discrepancy: 0.1836

The information below is about IL_5C5W_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

7UPH|1|I|G|3561
7UPH|1|I|U|3562
7UPH|1|I|G7M|3563
7UPH|1|I|A|3564
*
7UPH|1|I|U|3935
7UPH|1|I|C|3936
7UPH|1|I|C|3937

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain M

50S ribosomal protein L4