IL_7UPH_154

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UPH_154 not in the Motif Atlas

Geometric match to IL_7A0S_081

Geometric discrepancy: 0.3831

The information below is about IL_7A0S_081

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

7UPH|1|I|C|3844
7UPH|1|I|G|3845
7UPH|1|I|A|3846
7UPH|1|I|G|3847
*
7UPH|1|I|C|3858
7UPH|1|I|G|3859
7UPH|1|I|A|3860
7UPH|1|I|G|3861

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain l

50S ribosomal protein L35

Chain n

50S ribosomal protein L18

Chain v

50S ribosomal protein L27