IL_7UPH_159

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UPH_159 not in the Motif Atlas

Geometric match to IL_5J7L_338

Geometric discrepancy: 0.2764

The information below is about IL_5J7L_338

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

7UPH|1|I|C|3960
7UPH|1|I|C|3961
7UPH|1|I|A|3962
7UPH|1|I|A|3963
7UPH|1|I|G|3964
*
7UPH|1|I|C|3974
7UPH|1|I|G|3975
7UPH|1|I|A|3976
7UPH|1|I|C|3977
7UPH|1|I|G|3978

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain U

50S ribosomal protein L16

Chain m

50S ribosomal protein L36