IL_7UPH_161

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

7UPH|1|I|G|4070, 7UPH|1|I|A|4071

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UPH_161 not in the Motif Atlas

Geometric match to IL_7A0S_089

Geometric discrepancy: 0.2259

The information below is about IL_7A0S_089

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

7UPH|1|I|C|4004
7UPH|1|I|U|4005
7UPH|1|I|C|4006
*
7UPH|1|I|G|4068
7UPH|1|I|C|4069
7UPH|1|I|G|4070
7UPH|1|I|A|4071
7UPH|1|I|G|4072

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain L

50S ribosomal protein L3

Chain i

50S ribosomal protein L32